PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G014800.1
Common NamePHAVU_003G014800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 227aa    MW: 24842.8 Da    PI: 6.6762
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G014800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000489111123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Phvul.003G014800.1  89 FSCNYCRRKFFSSQALGGHQNAH 111
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-687116No hitNo description
PROSITE profilePS5015711.30289116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMKPNLNLEP EDDSKMYSQE GSDESHDFTM DNTSSSCLTK ADPDSGSLSL DLTLNFNLSD  60
EELKGATSHT NSESGGETHA SAIAVPRVFS CNYCRRKFFS SQALGGHQNA HKRERTLAKR  120
AMRMGMLTER YTSLASLPLH GSAFRSLGLE AHAAMHQAHL HTLRAPDMMA AAKFRKDYLR  180
TPIFVEDDDA GVFWPGSFRQ IDGSTRFVAA APPAQTSASP DLTLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-166AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153194.11e-168hypothetical protein PHAVU_003G014800g
SwissprotQ392633e-37ZFP4_ARATH; Zinc finger protein 4
TrEMBLV7C7631e-168V7C763_PHAVU; Uncharacterized protein
STRINGGLYMA07G27820.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-38zinc finger protein 4